List of publications
| Total found: 34 records |
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Wutkowska M.,
Nweze J.,
Tláskal V.,
Nweze J.,
Daebeler A. (2026) Uncovering hidden phylo- and ecogenomic diversity of the widespread methanotrophic genus Methylobacter FEMS Microbiology Ecology
102: article number fiaf127.
DOI: 10.1093/femsec/fiaf127 |
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Dahl M.B, Brachmann S., Söllinger A., Schnell M., Ahlers L.,
Wutkowska M., Hoff K.J., Nath N., Groß V., Wang H., Weil M., Piecha M., Schaffer M., Jensen C., Kuss A.W., Gall Ch., Wimmer E., Pribasnig T., Tveit A.T., Sigurdsson B.D., Schleper C., Richter A., Urich T. (2025) Quantifying soil microbiome abundance by metatranscriptomics and complementary molecular techniques—cross-validation and perspectives Molecular Ecology Resources
25: Article number e14130.
DOI: 10.1111/1755-0998.14130 |
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Hug L.A., Hatzenpichler R., Moraru C., Soares A.R., Meyer F., Heyder A., The data reuse Consortium,
Daebeler A., Probst A.J. (2025) A roadmap for equitable reuse of public microbiome data Nature Microbiology
10: 2384–2395.
DOI: 10.1038/s41564-025-02116-2 |
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Tláskal V., Dobbler P.T., Bosch J., Müller J., Brandl R., Bässler C., Baldrian P., Brabcová V. (2025) Fragile foundations: succession patterns of bacterial communities in fine woody debris and soil under long‑term microclimate influence Environmental Microbiome
20: Article number 101.
DOI: 10.1186/s40793-025-00756-9 |
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Tláskal V., Hrbáček J., Hanáček V., Baránková P., Čermák P., Zachoval R., Dobbler P.T. (2025) Short- and mid-term temporal variability of the human urinary microbiota: a prospective observational cohort study BMC Microbiology
25: Article number 222.
DOI: 10.1186/s12866-025-03915-7 |
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Bosch J., Dobbler P.T., Větrovský T.,
Tláskal V., Baldrian P., Brabcová V. (2024) Decomposition of Fomes fomentatius fruiting bodies –transition of healthy living fungus into a decayed bacteria-rich habitat is primarily driven by Arthropoda FEMS Microbiology Ecology
100: Article number fiae044.
DOI: 10.1093/femsec/fiae044 |
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Nweze J.,
Tláskal V.,
Wutkowska M.,
Meador Travis B., Pîcek T., Urbanová Z.,
Daebeler A. (2024) Regulators of aerobic and anaerobic methane oxidation in two pristine temperate peatland types FEMS Microbiology Ecology
100: Article number fiae153.
DOI: 10.1093/femsec/fiae153 |
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Richy E., Dobbler P.T.,
Tláskal V., López-Mondéjar R., Baldrian P., Kyselková M. (2024) Long-read sequencing sheds light on key bacteria contributing to deadwood decomposition processes Environmental Microbiome
19: Article number 99.
DOI: 10.1186/s40793-024-00639-5 |
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Tláskal V. (2024) Sodalis – bakterie na pomezí Živa
72 (1): 2-4.
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Tláskal V. (2024) Velká část modré ekonomiky je šedá Vesmír
103 (5) : 260-261.
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Wutkowska M.,
Daebeler A. (2024) Draft genomes of three aerobic methanotrophs from a temperate eutrophic fishpond Microbiology Resource Announcements
13: 1-4.
DOI: 10.1128/mra.00152-24 |
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Wutkowska M.,
Tláskal V., Bordel S., Stein L.Y.,
Nweze J.,
Daebeler A. (2024) Leveraging genome-scale metabolic models to understand aerobic methanotrophs The ISME Journal
18: wrae102.
DOI: 10.1093/ismejo/wrae102 |
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Daebeler A., Güell-Bujons Q., Mooshammer M., Zechmeister T. , Herbold C.W., Richter A., Wagner M., Daims H. (2023) Rapid nitrification involving comammox and canonical Nitrospira at extreme pH in saline-alkaline lakes Environmental Microbiology
25: 1055–1067.
DOI: 10.1111/1462-2920.16337 |
| Gunjal A., Gupta Shruti, Nweze J., Nweze J. (2023) Metagenomics in bioremediation: Recent advances, challenges, and perspectives In: Kumar V., Bilal M., Shahi S.K., Garg V.K., (Eds.): Metagenomics to Bioremediation. Applications, Cutting Edge Tools, and Future Outlook. Elsevier, pp. 81-101. ISBN 978-0-323-96113-4. DOI: 10.1016/B978-0-323-96113-4.00018-4 |
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Hrbáček J.,
Tláskal V., Čermák P., Hanáček V., Zachoval R. (2023) Bladder cancer is associated with decreased urinary microbiota diversity and alterations in microbial community composition Urologic Oncology: Seminars and Original Investigations
41: 107.e15-107.e22.
DOI: 10.1016/j.urolonc.2022.09.018 |
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Mueller A.J.,
Daebeler A., Herbold C.W., Kirkegaard R.H., Daims H. (2023) Cultivation and genomic characterization of novel and ubiquitous marine nitrite-oxidizing bacteria from the Nitrospirales The ISME Journal
17: 2123–2133.
DOI: 10.1038/s41396-023-01518-6 |
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Ni G., Leung P.M.,
Daebeler A., Guo J., Hu S., Cook P., Nicol G.W., Daims H., Greening Ch. (2023) Nitrification in acidic and alkaline environments Essays in Biochemistry
67: 753–768.
DOI: 10.1042/EBC20220194 |
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Odu N.M., Akor J., Eze L.A.,
Nweze J.,
Nweze J., Orjiocha S.I., Ejembi D.O., Onyeyilim E.L., Nwanguma B.C. (2023) Anti-inflammatory and antioxidant activities of selected fractions of Parinari kerstingii leaf extract Tropical Journal of Natural Product Research
7: 4954-4960.
DOI: 10.26538/tjnpr/v7i10.35 |
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Wutkowska M., Vader A., Logares R., Pelletier E., Gabrielsen T.M. (2023) Linking extreme seasonality and gene expression in Arctic marine protists Scientific Reports
13: Article number 14627 .
DOI: 10.1038/s41598-023-41204-3 |
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Daebeler A.,
Petrová E., Kinz E., Grausenburger S., Berthold H., Sandén T.,
Angel R. (2022) Pairing litter decomposition with microbial community structures using the Tea Bag Index (TBI) Soil
8: 163–176.
DOI: 10.5194/soil-8-163-2022 |
